cryocat.core.cryomotl.relion2stopgap

cryocat.core.cryomotl.relion2stopgap(input_motl, relion_version, load_kwargs=None, output_motl_path=None, update_coordinates=False, reset_index=False)

Converts a RelionMotl to StopgapMotl format and optionally writes it to a file.

Parameters:

input_motlstr or pandas.DataFrame or RelionMotl

Path to the input Relion MOTL file or an already loaded RelionMotl object.

relion_versionfloat

Version of the input Relion object.

load_kwargsdict, optional

Dictionary of keyword arguments passed to the RelionMotl or RelionMotlv5 constructor. See RelionMotl.__init__ or RelionMotlv5.__init__ for full list of accepted keys.

output_motl_pathstr, optional

If provided, the converted motl will be written to this path.

update_coordinatesbool, default=False

If True, updates the coordinates in the DataFrame.

reset_indexbool, default=False

If True, the index of the DataFrame will be reset before writing out.

Returns:

sg_motlStopgapMotl

The converted StopgapMotl object.