Modules#

cryocat.core.cryomotl

cryocat.core.cryomap

cryocat.core.cryomask

cryocat.core.cryowedge

cryocat.core.mdoc

cryocat.core.surface

cryocat.core.tiltstack

cryocat.utils.classutils

Class/introspection utilities + the annotation-driven type system.

cryocat.utils.exceptions

cryocat.utils.geom

cryocat.utils.imageutils

cryocat.utils.imod

cryocat.utils.ioutils

cryocat.utils.mathutils

cryocat.utils.scriptutils

cryocat.utils.starfileio

cryocat.utils.symmetry

Symmetry group rotations for cryo-ET processing.

cryocat.analysis.assembly

cryocat.analysis.clustering

Pure clustering algorithms extracted from cryocat.analysis.tango.

cryocat.analysis.memthick

Membrane thickness analysis of cryo-ET data in three stages:

cryocat.analysis.nnana

Nearest-neighbor analysis for particle motls.

cryocat.analysis.pana

Peak analysis (pana) — batch orchestration for template-matching peak analysis.

cryocat.analysis.sta

cryocat.analysis.tango

cryocat.analysis.tmana

cryocat.analysis.visplot