ribana

cryocat.analysis.ribana.add_chain_prefix(chain_df, motl, traced_df, subtomo_id, current_dist, store_idx1='object_id', store_idx2='geom2', store_dist='geom4', class_max=None)

cryocat.analysis.ribana.add_chain_suffix(chain_df, motl, traced_df, subtomo_id, current_dist, store_idx1='object_id', store_idx2='geom2', store_dist='geom4')

cryocat.analysis.ribana.add_occupancy(motl, output_motl=None, occupancy_id='geom1', object_id='object_id', feature='tomo_id', order_id='geom2')

cryocat.analysis.ribana.add_traced_info(traced_motl, input_motl, output_motl_path=None, sort_by_subtomo=True)

cryocat.analysis.ribana.assign_class(motl_unassigned, motl_list, starting_class=1, dist_threshold=20, output_motl=None, unassigned_class=0, update_coord=False)

cryocat.analysis.ribana.get_chain_distances(df, pixel_size, feature)

cryocat.analysis.ribana.get_class_polysome_occupancies_mdp(motl, occupancy_id='geom1')

cryocat.analysis.ribana.get_class_polysome_occupancies_mp(motl, occupancy_id='geom1')

cryocat.analysis.ribana.get_feature_nn(fm_entry, fm_exit, remove_duplicates=True)

cryocat.analysis.ribana.get_feature_nn_indices(fm_entry, fm_exit, remove_duplicates=True)

cryocat.analysis.ribana.get_monosome_stats(motl_entry, motl_exit, pixel_size=1.0, feature='geom1')

cryocat.analysis.ribana.get_nn_dist(kdt, query_point, dist_max, dist_min, active_points, test_value)

cryocat.analysis.ribana.get_nn_distances(motl_entry, motl_exit, pixel_size=1.0, feature='tomo_id', monosomes_only=False, type_id='geom1', angular_dist_type='full', remove_duplicates=True)

cryocat.analysis.ribana.get_nn_rotations(motl_entry, motl_exit, feature='tomo_id', monosomes_only=False, type_id='geom1', remove_duplicates=True)

cryocat.analysis.ribana.get_nn_stats(motl_entry, motl_exit, pixel_size=1.0, feature_id='tomo_id', angular_dist_type='full', remove_duplicates=True)

cryocat.analysis.ribana.get_polysome_stats(motl_entry, motl_exit, pixel_size=1.0, feature='geom1')

cryocat.analysis.ribana.get_rotations(df)

cryocat.analysis.ribana.plot_nn_coord(coord, displ_threshold=None, marker_size=20)

cryocat.analysis.ribana.plot_nn_coord_df(df, circle_radius, output_name=None, displ_threshold=None, title=None, marker_size=20)

cryocat.analysis.ribana.plot_nn_rot_coord_df(df, output_name=None, displ_threshold=None, title=None, marker_size=20)

cryocat.analysis.ribana.trace_chains(motl_entry, motl_exit, max_distance, min_distance=0, feature='tomo_id', output_motl=None, store_idx1='object_id', store_idx2='geom2', store_dist='geom4')